fermi
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lh3
A WGS de novo assembler based on the FMD-index for large genomes
Hi Heng Li It might be good to update the README with respect to downloading C. elegans The following doesn't work: ``` $ fastq-dump --split-spot SRR065390.lite.sra fastq-dump.2.8.1 err: item not...
Hello, Please advise on what to do with the following error: ``` Undefined symbols for achitecture x86_64: "_ld_set", referenced from: _bcr_append in bcr.o ``` Symbols not found for achitecture x86_64....
Hi, I am running fermi on 150bp paired-end reads from the HiSeq platform. I generated a makefile and tried to run it using the following command: make -f ../path_to/assemble.mak -j...
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Hello I run Fermi to assemble a plant genome using paired-end illumina reads The files p0-p3 were generated successfully, but the other two (p4-p5) are empty. By looking at the...
Hi I'm using fermi to assemble a very large animal genome with a single 180-bp Illumina HiSeq library. In this case, with the default parameters FERMI runs smoothly up to...
Dear Dr. Li, I ran fermi with commands shown in documentation but failed at the 'fermi clean' step with no log info and no output. What are the possible reasons...
Hello Dr.Li, I am trying to use FERMI for a plant genome assembly using Illumina PE sequences. I ran the run_fermi.pl with the below command /work/rn13ow/fermi-1.1/run-fermi.pl -Pt2 -e /work/rn13ow/fermi-1.1/fermi -k50...
I've run fermi on a very small dataset containing 22 fasta records using the following cmd: ``` run-fermi.pl -k 200 -p cdhitout_0.85 | make -f - ``` however `fermi` hangs...
