Heng Li
Heng Li
Oh, this should be fixed by #155
The test is intentional. When you use `-O4,4 -E2,2` or simply `-O4 -E2`, minimap2 will use the standard affine gap penalty which is faster than dual-affine. As we are talking...
BTW, thanks for the caution on pore-C. That may indeed happen and I haven't thought about it before. Thinking more about pore-C, I guess you probably want to disable long-range...
> I've had a go at implementing a BAM2 with 64-bit reference lengths. The results so far can be found in my bam2 branch if anyone wants to try it....
I am thinking about a different way to implement BAMv2. It works on two conditions: 1. The BAM version string is put into an uncompressed BGZF block, such that it...