MSnbase

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Is it possible to split the chromatograms from multiple files

9

Dear expert, I tried to plot the extracted chromatograms from multiple files individually. I got the error when I split the chromatograms and I checked the lengths of two inputs...

MuyaoXi9271

Next release: use fragment calculation code and aa mases from `PSMatch`

lgatto

MRM Analysis Help

10

Hello, This references an issue I posted a while ago: https://github.com/lgatto/MSnbase/issues/551 So, I have a set of Agilent .d MRM files that I was able to convert to mzML and...

jamesrgraham

Error in retention time vector generated by MSmap

1

Hi, This is specific to the function MSmap, and I wonder if I have come across a bug (or more likely I've made some mistake...). First I open my sample:...

Lasseeli

Extract chromatogram object(s) from mzML Data

2

Hi, I have problems importing mzML/mzXML files with the readMSData function. They are originally from Agilent ".D" which I converted to mzML/mzXML (vers. 1.1 ) using OPENCHROME (vers. 1.4). If...

bathmer

Error in reading Agilent .d files converted to .mzML via msconvert

42

Hello, I have some Agilent .d files that I converted to .mzML on a linux server with msconvert installed via docker and wine. All other file types convert to .mzML...

jamesrgraham

error writing mzML file

3

Hi, I'am try to write an mzML file, but get the error: `Error in h(simpleError(msg, call)) : error in evaluating the argument 'args' in selecting a method for function 'do.call':...

ricoderks

recalibration

4

Hi, I would like to modify the m/z values in an OnDiskMSnExp for recalibration purposes, but I can not figure out how to modify the m/z values. Do I need...

ricoderks

possibility to use filterRt for multiple regions

3

I am trying to speed up peak-picking parameter optimization of certain peaks by sub-setting the RT to where peaks have already been found. Right now I can only subset to...

stanstrup

CDF read seems slow

19

Hello, XCMS user here, finally trying to adapt an older workflow to new XCMS/MSnbase. Most of the files I work with are in .cdf format. Waters Databridge spits data out...

cbroeckl