Xiang Li
Xiang Li
2022 Google Summer of Code project by Atmika Mishra. https://github.com/cBioPortal/GSoC/issues/88 **Goal**: Add the **Lollipop Plot** visualization to the Group Comparison Page. **Approach**: - Add new tab "Mutations" to the comparison...
Part of GSOC project: https://github.com/cBioPortal/cbioportal/issues/9618 Add comparisonGenes to url, for example “https://www.cbioportal.org/comparison?comparisonId=6296efd204dc35387469d2b1&comparisonGenes=TP53,KRAS”. Check if comparisonGenes is in the url, if yes, adding Mutations tab in comparison page. Put some texts...
Hi, https://myvariant.info/v1/variant/chr17:g.41276045_41276046del doesn't have clinVar data, but looks like this is the same one https://www.ncbi.nlm.nih.gov/clinvar/variation/17662/#id_first, is the data missing in the query? Thank you!
Fix: https://github.com/cBioPortal/cbioportal/issues/9755 Reason: Annotation column is excluded when go to non-canonical transcript, so there is no visibility setting for annotation column in user selection store. When switching to canonical transcript,...
## Related tickets and mockup - Improve annotation column: https://github.com/cBioPortal/cbioportal/issues/8522 - Grouped columns in mutations table: https://github.com/cBioPortal/icebox/issues/189 - Store user settings on what columns are shown for patient view and...
Uniprot.Swiss-Prot for some genes are not available after the recent [update](https://github.com/biothings/mygene.info/issues/140). For example gene `AR`(entrez ID 367) doesn't have uniprot information anymore https://mygene.info/v3/gene/367?fields=uniprot, it should return P10275 in the response....
**Background**: - [Genome Nexus](https://www.genomenexus.org/) is a comprehensive resource integrating variant annotations from more than a dozen sources relevant to cancer. The annotations can be accessed through a performant application programming...
There are 4 CTNNB1 mutations in crc_msk_2017 study failing on genome nexus annotation, the reason is genome nexus need to verify provided reference allele with the response reference allele from...
This is a request from GENIE. The error message for some variants are not very helpful, especially for annotations that don’t have HGVSc and HGVSp, but variant classification is NOT...