Lucas Czech
Lucas Czech
I'm still interested in that, please don't close the issue, dear bot :-)
Disappointing. Any explanation as to why this is not planned?
Hi Belen @BelenJM, thanks for using grenepipe! I assume that this is on Computerome, right? They are using the PBS/Torque scheduler (which is where you use `iqsub` and `qsub` to...
Hi @BelenJM, just briefly wanted to check in with you: Did the above help? Also, I have started working on a major update of the way that resources are specified...
Hi Belen, > I have many samples (>700) so it would have been super to use the parallelization mode in TORQUE. Great news you are working on a major update...
> My only challenge now is to link the info from the resources.yaml file you wrote into this qsub line, and this is where I am now a bit lost....
> And if I need/want to add a new key, e.g., project number (proj: "xxx_03") so I can use it in the qsub line, that is possible. But not change...
> I was basing myself on the resources.yaml file. Ah, makes sense to assume that. I will update the commends in the file for clarity!
Yep: > resources: mem_mb=1000, mem_mib=954, disk_mb=17955, disk_mib=17124, tmpdir=/tmp, runtime=60 is runtime in minutes, while Torque interprets that as seconds: > =>> PBS: job killed: walltime 78 exceeded limit 60 You...