Lucas Czech

UNLIMITED SPACE? You could get rich! :-D Yes, see what happens. If things get deleted from that temp dir once the job finishes, it could be that it is too...

Hi Yannick, > the last attempt unfortunately also finished with the same "permission denied" notification in regards to that scratch directory. That does not look like an issue with Snakemake...

Hi @Leovar101, any updates on this? Cheers Lucas

Hi @Leovar101, did you get things to work now? I'll close the issue for now, but feel free to comment or start a new one if you have any further...

Hi Yannick, oh wow, okay, glad you figured this out! Weird though that tmux is causing a memory issue there... it should not matter for Snakemake from where it's being...

Hi Martin, thanks for your patience, finally circling back to working on grenedalf. To make sure that I am understanding your suggestion correctly: Do you want to be able to...

Hi Martin @capoony, I just released [grenedalf v0.6.0](https://github.com/lczech/grenedalf/releases/tag/v0.6.0) which implements all of the above features. Let me know if this works for you, or if this does not solve your...

Hey Martin, just to also answer your comments in a bit more detail. I think I might have been a bit quick to close this issue - reopening now, so...

Okay, I stared at the code for a bit longer. Adding ``` logger.setup_logfile() ``` as the first line to the above minimal example creates (unsurprisingly) a second log file, because...

For anyone who is also looking for a temporary workaround: I'm now just creating my own custom log file on top of the normal snakemake log file. Not ideal, but...