lculibrk

Mutect2 is incompatible with Mutect2 VCFs as feature files

6

## Bug Report ### Affected tool(s) or class(es) Mutect2 ### Affected version(s) 4.4.0.0 ### Description Hello GATK team, I am working on a pipeline that calls variants using Mutect2 and...

**Is your feature request related to a problem? Please describe.** For e.g. I have IO-heavy jobs that I want to limit in a local context. Let's say that I want...

Python3

1

Hi, Python 2 has been End of Life for over four years now. Are there plans on updating strelka2 to utilize python3 or should it be considered abandonware at this...

Hi there, I've encountered this recently while trying to run ABRA2-processed bams through Strelka2. Strelka2 appears to yield empty VCFs, with all variants labeled as 'non-candidate' when given ABRA2 bams....

Buildx throws Illegal Instruction installing ca-certificates when building for linux/amd64 on M2

11

### Description I'm running Docker for mac version 25.0.3 on an M2 (arm64) machine. When trying to build some relatively simple images using buildx on linux/amd64 arch, I get illegal...