lculibrk

Experiencing the same issue on 6.1.1

Shouldn't this be possible with current functionality? Going by the docs: https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html ``` def get_mem_mb(wildcards, attempt): return attempt * 100 rule: input: ... output: ... resources: mem_mb=get_mem_mb shell: "..." ```...

I believe this kind of value should be available somewhere in the env as I said in `snakemake.resources` or something of that sort, but you'll need to do some digging...

My solution to this was to use input functions to create a "linear" DAG. If you have a workflow of A->B->C and for e.g. sample_1 and sample_2 to process, you...

I've built a docker image for the SigProfiler tools. I haven't extensively tested it, but it builds just fine. GRCh37 and GRCh38 are installed. https://hub.docker.com/repository/docker/lculibrk/sigprofiler `singularity pull docker://lculibrk/sigprofiler:latest`

Update on my previous comment, The container runs into the errors outlined here: https://github.com/AlexandrovLab/SigProfilerExtractor/issues/247 I'll try to rebuild and see if that helps. @mdbarnesUCSD , if this is an issue...