Lucia Conde

Hi Brent thanks for your quick reply. Yes, I can see how the sorting issue can make it difficult to implement. Splitting the BDNs is an easy workaround, so I'll...

Having the same issue here. Using `--skipZeroOverZero` produces large bins that appear as long blocks in the UCSC browser when visualising the data. Removing `--skipZeroOverZero` resolves the issue. Command used...

I'm having the same issue with cnvkit not providing the output files *for the normals*. It provides the somatic results, but it fails when doing germline calling in the normals....

Hi Phil, I am also very interested in adding annovar, I'm attaching an example output file (first 1000 lines only), please let me know if you need anything else. Thanks...