Leonardo Collado-Torres

icon indicating a website link http://lcolladotor.github.io icon indicating an email [email protected]

icon company @LieberInstitute icon location Baltimore, USA icon location Find more information about myself at my website where I post my recent publications, talks, blog posts and other updates.

Results 133 comments of Leonardo Collado-Torres

ggbio tracks with labelled: problem when I add a main title

Note that you can use version 1.8.8 which doesn't have this issue http://master.bioconductor.org/packages/2.12/bioc/html/ggbio.html

ggbio tracks with labelled: problem when I add a main title

Hi, I haven't heard of any progress on this issue. I just double checked, and the issue is still present in Bioc-release ggbio 1.10.10 and Bioc-devel 1.11.9 Best, Leo

ggbio tracks with labelled: problem when I add a main title

Thanks for the good news tengfei!

ggbio tracks with labelled: problem when I add a main title

We should close this issue now that it has been solved

`Segmentation fault (core dumped)`

I have not seen this before. Hmm, this is likely unrelated. But maybe setting the number of threads (I think it's setDTthreads() ) to 1 will help. data.table has a...

Cropping of source image by affine transform

Can you put the files on a gist? https://gist.github.com/ That might be the way to go here. Or share them via a public LIBD OneDrive link.

[BUG] Fail to obtain the spe data of DLPFC

Hm.... while trying to reproduce your issue I ran into https://github.com/Bioconductor/BiocFileCache/issues/48 and re-opened that issue with this comment https://github.com/Bioconductor/BiocFileCache/issues/48#issuecomment-2120473001. Try downloading the data manually from https://github.com/LieberInstitute/spatialLIBD/blob/f25860feda852255423fe315fd99a13f0b0db6a8/R/fetch_data.R#L142. See https://github.com/LieberInstitute/spatialLIBD/issues/73#issuecomment-2016520542 for more...

[BUG] Fail to obtain the spe data of DLPFC

Excellent!

[BUG] Fail to obtain the spe data of DLPFC

I know realize that this issue is the same one from #89 that is due to a bug in a dependency (https://github.com/csgillespie/benchmarkme/issues/49).

Implementation of non-linear dimensionality reduction algorithm (UMAP)

Hi. I don't really use Python and was not part of the work Peter, David and Aaron Lun did. So I can't really comment on this thread. Best, Leo