Leonardo Collado-Torres

icon indicating a website link http://lcolladotor.github.io icon indicating an email [email protected]

icon company @LieberInstitute icon location Baltimore, USA icon location Find more information about myself at my website where I post my recent publications, talks, blog posts and other updates.

Results 133 comments of Leonardo Collado-Torres

expressed_regions() is not working with the new IDIES and AWS bigWig file locations

I just wrote https://github.com/lawremi/rtracklayer/issues/83. Let's see where that leads. Thanks again Chris!

expressed_regions() is not working with the new IDIES and AWS bigWig file locations

Note that I posted an update to https://github.com/lawremi/rtracklayer/issues/83#issuecomment-2121313270 today and updated the `recount` package to try to implement some workarounds. This is also related to #25 .

package ‘recount’ is not available for Bioconductor version '3.19'

Hi, From https://bioconductor.org/packages/release/bioc/html/recount.html I do see the landing page for `recount` on BioC 3.19. Though there are some build errors in operating systems except for winOS https://bioconductor.org/checkResults/release/bioc-LATEST/recount/ This is is...

package ‘recount’ is not available for Bioconductor version '3.19'

Hi, I posted an update at https://github.com/lawremi/rtracklayer/issues/83#issuecomment-2121313270 and also edited the `recount` vignette to implement a workaround to the `rtracklayer::import()` issues for remote BigWig files. The workaround involves downloading the...

ggbio tracks with labelled: problem when I add a main title

I have seen the same issue, illustrated with a different example at https://stat.ethz.ch/pipermail/bioconductor/2013-December/056502.html