Leonardo Collado-Torres

Oh interesting, thanks Aaron! I'll do that tomorrow morning. Thanks!

Hi Aaron, ## Reverting the bugfix reproduces prior results Using https://github.com/lcolladotor/DropletUtils/commit/eb8eb45bb2f9571931435ab5f382f56b99e46c71 which reverts https://github.com/MarioniLab/DropletUtils/commit/584320df70b0c3f8991a1a1485b660225860f780 on BioC 3.14 I do indeed get the same results I get with BioC 3.13 using...

Hi @EperLuo, I believe that you are running into the issue described at https://github.com/Bioconductor/BiocFileCache/issues/48 and https://github.com/curl/curl/issues/13725. What is the output of `curl::curl_version()` for you? Is it version 8.6.0? best, Leo

Looks like we could use https://github.com/daattali/shinyalert to provide more informative error messages.

Hi @xxchenm, Can you run the following? ```R BiocManager::install("ArtifactDB/gypsum-R@master") ``` then in a new R session run: ```R library("scRNAseq") sce.416b

Hi, I couldn't reproduce your issue using the latest version of `spatialLIBD`: ```R devel* > sce_layer sce_layer class: SpatialExperiment dim: 12225 268 metadata(1): PCA_var_explained assays(2): counts logcounts rownames(12225): ENSG00000237491 ENSG00000228794...

Closed after we didn't get any more details from the OP for 5 months.

PS This will be a package where both Nick and I will ultimately need Git push permissions on BioC. Thanks in advance!

Hi Lori, Hmm, that's weird. It seems like you have access to an older version since https://github.com/LieberInstitute/visiumStitched/actions/runs/10290020036/job/28479030122 did complete `R CMD build` and other steps. Note that since Nick made...

Hi @Nick-Eagles, Have you had a chance to look into resolving the issue(s) with your Bioconductor Support account (watched tags) + Bioconductor email support subscription? Remember that once you have...