loic borcard

Seqkit bam error

1

Hello I am using the `seqkit -bam` function to output alignment data, and I have been getting this error: ``` Read Ref MapQual Acc ReadLen RefLen RefAln RefCov ReadAln ReadCov...

Dear authors, We are trying to run the fastspar command with the thread options but it is still running in one single thread. Do you a way to circumvent that...

no Corrected reads created

1

Dear Canu team, We had contacted you last year regarding the assembly of amplicon and you had kindly answered. Our test with amplicon of size>1000 showed promising results. We now...

Maximum File size exceeded

1

I ran into this issue and tried the suggested command : `options(shiny.maxRequestSize=500*1024^2)` but to no avail, is there anything else I can try? Love the app by the way, thanks

[CLI] sz_split error

8

Thank you very much for sharing this great project. I am using the cli tool sz_split and it's stopping after the first split when I specify `-n 20` . It...

Arviz plots not being displayed

5

### Describe the bug I am using the arviz library with Pymc and the plots are not being displayed. All I see is the axis infos but not the plots....

ERROR : Failed to find the number of jobs in 'unitigging/0-mercounts/meryl-count.sh'. 2.3dev

1

Dear Canu Team, I have recently compiled a more recent version of Canu (-- canu snapshot v2.3-development +162 changes (r10433 c61ebbb7a5f90abb9c034650e2fd95642138de31) to assemble small amplicons and it seems that the...