Uri Laserson
Uri Laserson
Not at the moment, but shouldn't be difficult to add. We'll track that feature here. In the meantime, it may be possible to manually edit the aws.conf file to achieve...
It appears the state machine isn't being modeled correctly
I would guess this has to do with how ADAM handles multiallelic variants. You'll notice that the ADAM `Variant` schema only supports a single alternate allele: https://github.com/bigdatagenomics/bdg-formats/blob/master/src/main/resources/avro/bdg.avdl#L430-L438 If we encounter...
This will also ensure that the `eggo` command could manage multiple clusters.
This will also ensure that eggo would be more easily expanded to support other clouds, like GCE
Where things are installed. What env vars are set. `PATH` manipulations.
As a workaround, when I load motifs, I run them through this function: ```python def add_normalized_array_pwm(motif: Motif) -> Motif: """Adds numpy array version of pwm as `Motif.array_pwm` Note that this...
I'd call in @ryan-williams to state definitively. I'm not sure the state of the Scala impl at the moment. But I think this issue is more specifically geared at wrapping...
Indeed it's nice bc it's portable across systems and has environment management etc. I haven't packaged anything for it myself, but I'm assuming it should be pretty easy to automate...