Uri Laserson comments

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                                            Uri Laserson

[ch-10] Updates to ADAM code examples

If we can extract all the code from the book into a single document or "script", it may be worth keeping it updated with the latest ADAM version.

Move ValueSortedDict into SortedContainers (was: Support for SortedBidict)

+1 on adding `ValueSortedDict` to the "core" library

Top X things to try when troubleshooting training in biology

That all sounds great to me @cgreene! I would also vote that it would include some higher-level view of the common threads across all the papers you've seen (analogous to...

[FEATURE] Typer python API docs

+1 on this

Support bokeh 3.0.3

@sfc-gh-jrieke, if you're polling, I'd vote to switch to Bokeh 3.

detect when a method doesn't return valid BedTool-supported output

Perhaps at least add a note in the docs? Less confusing that way...

detect when a method doesn't return valid BedTool-supported output

Just `genome_coverage` for me so far

CIS-BP identifier mapping for Lambert et al

Currently, if I take any of the CIS-BP ids from the paper, there is no way to actually match them to any motifs. There is one additional tab-delim file you...

FTP concurrent requests problem

Thanks for submitting the issue. I don't have time to maintain this, though. Feel free to submit a PR if you figure it out.