detect when a method doesn't return valid BedTool-supported output
BedTool.genome_coverage sometimes returns bedGraph-like output, sometimes not. In fact, by default, it doesn't return a valid BED-ish format file.
See #110, #111, #112.
note to future self: this prob needs yet another kwarg to bedtool._wraps, and you will need to go through BEDTools programs and args to work out which don't create valid output files.
Perhaps at least add a note in the docs? Less confusing that way...
Yep, good idea. Did you hit this with genome_coverage specifically or with another method?
Just genome_coverage for me so far
#213 adds some documentation. I will try implementing something like https://github.com/daler/pybedtools/issues/110#issuecomment-206426464, xref #167