Vijay Lakhujani

Cannot execute pysenic: HDF5 library version mismatched error

2

Hi, I am unable to run pySCENIC on ubuntu 16.04 LTS edition, 64 bit. I have created a conda environment called `pysenic` using below command `conda create -n pysenic python=3.6`...

I have a vcf file which have few rows with following type of data and I could observe that all of this is being filtered out. ``` grep -v "^#"...

plot_taxa_summary.py script should output pie chart and the corresponding legend in the same image file

1

Dear QIIME team, First of all, please accept my heartfelt thanks that you people developed such a user-friendly and comprehensive tool for 16S data analysis. We are into bioinformatics research...

Too small size of Novoplasty assembled mitochondrion genome

1

Hi Nicolas, Hope you are doing well. I am kind of stuck in the assembly process and I thought I would ask you directly about the same here. I have...

Error running convading: Incorrect BED file format, please check your BED file before processing

9

I am getting 2 types of errors while running convading. My command is ``` perl/CoNVaDING-1.2.1/CoNVaDING.pl \ > -mode StartWithBam \ > -inputDir /00_bam_files \ > -controlsDir 00_bam_files \ > -outputDir...

Error running gffcompare

3

I am trying to run the following command: `gffcompare -r ref.gff -G -o merged stringtie-merged.gtf` ref.gff - downloaded from NCBI string-merged.gtf - obtained from stringtie --merge command **Error encountered :**...