cutevariant
cutevariant copied to clipboard
A standalone and free application to explore genetics variations from VCF file
We must support list type. I suggest to create many columns as they are sub column. For instance, if you have a column as it mention from SnpSift documentation: Cases=1,2,4;...
Using nodeeditor, arrange table and set operation ! VariantSet and Operation (Intersect, union, except) can be joined together as node ![image](https://user-images.githubusercontent.com/1911063/57186011-c98d1080-6ed7-11e9-8cfe-65a1846b53fc.png)
Need to explore how can I display a mutation from a 3D molecular perspective.
- Can load chrom,pos,ref,alt,samples, genotypes , gene and transcript
Sometimes, when running a PySide6 module, you may get an error: ``` qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "" even though it was found. This application...
When selecting something in a table, the deep blue color makes the text difficult to read. This has led to behaviors such as selecting the line below the variant that...
- [ ] Increase the number of displayed variants per page above 100 (or remove the limit instead of increasing it) - [ ] In samples module: option to display...
Fix #574
**Describe the bug** ``` Traceback (most recent call last): File "/usr/local/Caskroom/miniconda/base/envs/cutevariant_dev/lib/python3.9/site-packages/cutevariant/gui/plugins/genotypes/widgets.py", line 219, in data if role == Qt.BackgroundRole and item["classification"] > 0: TypeError: '>' not supported between instances of...
Fix #585