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Published 20 hours ago • verified publisher icon labsquare

3d molecule viewer

Open dridk opened this issue 5 years ago • 5 comments

Need to explore how can I display a mutation from a 3D molecular perspective.

dridk avatar Apr 10 '19 09:04 dridk

From the point of view of the nucleotide or DNA helix / protein structure ?

Showing the relevant nucleotide and its chemical structure is possible but looking for additional info as the hydrophobicity should require an internet connection unless we stores this info in a local database.

ysard avatar Apr 13 '19 20:04 ysard

Display a mutation ( amino acid) from a 3D protein structure . Yes, I thought to use a webGL viewer which required an internet connection

dridk avatar Apr 13 '19 22:04 dridk

Something like this : http://www.cbioportal.org/mutation_mapper

dridk avatar Apr 13 '19 22:04 dridk

http://hg19.cravat.us/MuPIT_Interactive/

dridk avatar Apr 16 '19 08:04 dridk

Hope has an API http://www.cmbi.ru.nl/hope/api/

dridk avatar Apr 16 '19 09:04 dridk