cutevariant
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labsquare
A standalone and free application to explore genetics variations from VCF file
**Describe the bug** When a variant is selected and multiple samples selected (in validation widget), the validation is done only in one sample. **To Reproduce** Steps to reproduce the behavior,...
Proposition to improve quick search: - [ ] Quick search bar error in focus (need to unfocus main window to focus on quick search bar) - [ ] Apply quick...
**To Reproduce** 1. Open the Filters plugin 2. Save a new filter "filter1" 3. Click on the Filters list in the main window selector: "filter1" does not appear 4. Create...
Create a new keywords $selected in VQL language ```sql # WIl select expand genotype fields SELECT samples[$selected].gt FROM variants SELECT samples[$selected].gt FROM variants samples[$selected].gt > 1 ``` usage : -...
Pdb is a database of protein with 3d structure. The website contains a 3d viewer for each protein. OBJECTIF : create a 3d viewer as a QWidget. The easiest solution...
HaploView is a half heatmap showing linkage desequilibrum (LD) between mutation along a genom axis. Here, red color intensity of a square represent the LD as a value between 0...
VCF example from #128 are already annotated. It seems they used the old snpEff EFF prefixed annotations. specification are avaible here : https://pcingola.github.io/SnpEff/se_inputoutput/#eff-field-vcf-output-files
Add option for merging ( sum, avg ) of duplicates fields
### Discussed in https://github.com/labsquare/cutevariant/discussions/388 Originally posted by **NourMarzouka** April 21, 2022 I wonder if there is any plan to add an import option for the annotated JSON file from the...
In order to be able to create VQL with column comparison, enable "value" as a column. Example: SELECT chr,pos,ref,alt FROM variant WHERE **ref = alt** Suggestion: - add in sql.txt:...