Kevin Vizhalil

Results 11 comments of Kevin Vizhalil

@saramsey I agree! I'll raise an issue there.

@saramsey the fix is in merged into master and tested on ci

@maximusunc can you send me the query you used and also the arax/kg2 endpoint called?

Thanks @saramsey and @sundareswarpullela for deploying on the `/beta` and the `/kg2beta` endpoints

We get inf values because [here](https://github.com/RTXteam/RTX/blob/dev/code/ARAX/ARAXQuery/Overlay/compute_ngd.py#L114) if we return nan, we assign the ngd value to `default_value` and `default_value` is set to `inf` if not provided in our query [here](https://github.com/RTXteam/RTX/blob/master/code/ARAX/ARAXQuery/ARAX_overlay.py#L588)....

Hi Amy, We do have a block list now and we are going to implement semmeddb filtering based on novelty score.

Seems to be fixed now [the test query](https://arax.ncats.io/?r=247450)

@amykglen I've modified those testcases, currently only one test case is failing(test_chemical_substances_that_down_regulate_STK11_issue_28) because the edge bindings in the result returned by molepro is None [here](https://github.com/RTXteam/RTX/blob/NewFmt/code/ARAX/ARAXQuery/Expand/trapi_querier.py#L200) and I'm not too sure...