Kushal Kolar
Kushal Kolar
I think you can just load the tiff file using the gui, select to not load the meta data, and then in the console: `get_meta()['fps'] = 0.2` Btw if you...
I don't know anything Fluorosnap, but I'd suggest you do that downstream analysis elsewhere. Jupyter notebooks are great once you have a basic understanding of Python. On Sun, May 15,...
you can just create a minimal dict and save that as a json file with the same name as the corresponding tif file as outlined in the docs
You can try the caiman demo movies. I would go through the caiman demo notebooks first and then get into mesmerize to make your process faster and more efficient. On...
Mesmerize and caiman version? I you can't get it working by late this afternoon just use the VM for the workshop. On Tue, May 31, 2022, 23:06 WhereWolf72 ***@***.***> wrote:...
Mesmerize version?
try running this in the welcome window console: ```python import os os.environ["HOME"] = C:\path\to\your\user\dir ``` Press shift + enter to execute stuff in mesmerize consoles
Thanks for the details @EricThomson ! Are you setting your border pixel parameters when you run it yourself in a notebook?
This looks like it's either due to border pixel not being set in your notebook, or the nan border not being set in mesmerize for some reason.
Are you setting the bord pix when running it in a notebook though? Mesmerize should set it automatically. On Wed, Aug 4, 2021, 08:13 Eric Thomson ***@***.***> wrote: > Good...