Kushal Kolar

@pgunn no worries, I could try to implement this for offline motion correction and do a PR later this week.

I have tested it with motion correction of 2D data (2D + time), but you're right I'll test this more extensively and with 3D files as well and get back...

I like the hashing idea! Maybe implementing `__hash__` for `CNMFParams` is a starting point?

Thanks for providing details! I can take a look at this next week, I have an important exam this weekend. @DanielDondorp you could check this out if you have time.

@pr4deepr @DanielDondorp I think that the gridsearch isn't saved to file, only the iteration which you have chosen. You really only need the final iteration which was the best and...

@pr4deepr Sorry for the late response (been cleaning up issues this weekend). Let me know if you want to chat sometime for help on implementing this.

All the kshape related code is here: https://github.com/kushalkolar/MESmerize/tree/master/mesmerize/plotting/widgets/kshape So the `ksgrid` is saved as a json string within the `.ptrn` hdf5 file structure: https://github.com/kushalkolar/MESmerize/blob/master/mesmerize/plotting/widgets/kshape/widget.py#L950 You might want to play around...

@pr4deepr This is a pretty specific use case. I would perform CNMF On the entire FOV, get the center of mass for each spatial component and filter the ones that...

@JCKMes Please see last line of the error message: `xmltodict` must be installed to use ome_tiff meta data ```bash pip install xmltodict ```

@JCKMes I'm guessing this is something specific to thr Zeiss OME tiff. I would just set the framerate and not worry about the rest of the meta data.