Sandeep Kumar

[bactopia-tool] antiSMASH as a bactopia tool

3

I will leave this as a question as I am not sure if it is feasible to add antiSMASH as a bactopia tool? https://antismash.secondarymetabolites.org/#!/about Thanks

[question]Venn diagram from pirate output

3

Might be a lame question, but I was wondering if there is any quick way to make Venn diagram from pirate output?

multiple ont reads for one sample-how to prepare --sample file[question]

7

Hi @rpetit3 I have multiple ont reads for one sample and I have multiple samples to process in one go. Could you please see my input file below and suggest...

agglomerateByRank help

17

Hi, I wanted to explore family-level abundance density, and for that, I used the code below. `v5v7_TSE_family % agglomerateByRank(rank = "Family")` `plotAbundanceDensity(v5v7_TSE_family, layout = "jitter", abund_values = "relabundance", n =...

Can you add a new gene in the list and run the whole analysis from profile to tree?

1

Hi, I was just wondering if there is a way to add an extra gene(s)on top of 61 marker genes, in the core gene list before we run the analysis?...