alphafold
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kuixu
Install alphafold on the local machine, get out of docker.
Hi there, I started downloading all data into my designated folder with sufficient room. While I am able to download params, bfd, mgnify, pdb70, and uniclust30, I got error message...
Hello,I have follow you readme to install the anaconda environment,and it can run with cpu ,but it can not run with gpu ,and in my devices have a nvidia RTX...
Hi, I can't run alphafold deamon after installation (see below). $ python3 run_alphafold.py --fasta_paths=T1050.fasta --max_template_date=2020-05-14 /opt/conda3/envs/af2/lib/python3.8/site-packages/absl/flags/_validators.py:203: UserWarning: Flag --output_dir has a non-None default value; therefore, mark_flag_as_required will pass even if...
Dear All, I am trying to install the software on my system (ubuntu) and when I execute the script for installing the software (install_on_local.sh) I get following error; """ Solving...
Hi! Thank you for your hard work. Is there any particular reason reduced_dbs is not provided as a --preset flag option?
I am getting the following error: `I0826 14:47:31.789251 139693760276288 run_alphafold.py:185] Running model model_1 WARNING:tensorflow:From /home/zapata/alphafold/alphafold/model/tf/input_pipeline.py:151: calling map_fn (from tensorflow.python.ops.map_fn) with dtype is deprecated and will be removed in a future...
Hi, I have run as guide (see below). python3 run_alphafold.py --fasta_paths=m.fasta --max_template_date=2015-11-10 However, I only see a folder msas/ in output dir, with both mgnify_hits.sto and uniref90_hits.sto inside folder msas/....
The file stereo_chemical_props.txt, which is read by alphafold/common/residue_constants.py is not found. This is because that path is presumed to be in the current directory, which would only by the case...
I ran download_all.sh. When it got to the script download_pdb_mmcif.sh, it failed with this error: `mv: cannot stat ‘.../alphafold/pdb_mmcif/raw/*/*.cif’: No such file or directory ` This seems to be because...
Hi, I could successfully install and run your version of alphafold, however, I notice only 1 GPU is used, even though I have 8x RTX 3090 cards. When it reaches...
