stereo_chemical_props.txt is not found

Open mcahn opened this issue 4 years ago • 2 comments

The file stereo_chemical_props.txt, which is read by alphafold/common/residue_constants.py is not found. This is because that path is presumed to be in the current directory, which would only by the case if the program is run from the source directory.

That path should probably be joined to FLAGS.data_dir, but FLAGS.data_dir is not passed into the function that needs it.

Jul 29 '21 20:07 mcahn

Sorry for the delayed reply. Here is the path:

alphafold/common/stereo_chemical_props.txt

Jul 31 '21 01:07 kuixu

Thanks. However the problem is not that I don't know where the file is. The problem is that the program doesn't find the file.

Jul 31 '21 02:07 mcahn