Kathrin Trappe
Kathrin Trappe
Thanks for the suggestion @peterdfields . We will try to incorporate a workaround for different samtools versions in our refactored version and look into the threading option (@eseiler )
Hi @peterdfields A refactored and newer version of Daisy is available under https://gitlab.com/rki_bioinformatics/ in the DaisySuite project. DaisySuite includes Daisy and a novel tool, called DaisyGPS, that tackles the problem...
Actually, NanoComp https://github.com/wdecoster/nanocomp might be the better option here.
https://github.com/nf-core/modules/issues/3110
@tamuanand you can also make use of the existing `$args`. I added the following to my modules.config ``` withName: NANOPLOT { ext.args = { "--prefix ${meta.id}_" } } ``` This...
Thanks James! Hopefully I made all the right adjustments!
@jfy133 I had to merge all the changes from the nf-core bot or rather those made by Prettier. There are also many changes for other modules.
@jfy133 I created a new branch polypolish2 and local tests look good. Should I open another pr?
Abandoning for https://github.com/nf-core/modules/pull/8099