[MODULE] added new module polypolish/polish

[ktrappe]

PR checklist

Closes https://github.com/nf-core/modules/issues/8024

• [ ] This comment contains a description of changes (with reason).
• [ ] If you've fixed a bug or added code that should be tested, add tests!
• [x] If you've added a new tool - have you followed the module conventions in the contribution docs
• [ ] If necessary, include test data in your PR.
• [x] Remove all TODO statements.
• [x] Emit the versions.yml file.
• [ ] Follow the naming conventions.
• [ ] Follow the parameters requirements.
• [ ] Follow the input/output options guidelines.
• [x] Add a resource label
• [x] Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • [ ] nf-core modules test <MODULE> --profile docker
    • [x] nf-core modules test <MODULE> --profile singularity
    • [ ] nf-core modules test <MODULE> --profile conda
  • For subworkflows:
    • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile docker
    • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile singularity
    • [ ] nf-core subworkflows test <SUBWORKFLOW> --profile conda

[ktrappe]

Thanks James! Hopefully I made all the right adjustments!

[jfy133]

@nf-core-bot fix linting

[jfy133]

You need to update your snapshots @ktrappe , the new snapshot has the newly added debug channel whereas the original snapshot does not

[ktrappe]

@jfy133 I had to merge all the changes from the nf-core bot or rather those made by Prettier. There are also many changes for other modules.

[ktrappe]

@jfy133 I created a new branch polypolish2 and local tests look good. Should I open another pr?

[jfy133]

Yes! Please open @ktrappe !

[ktrappe]

Abandoning for https://github.com/nf-core/modules/pull/8099