Krzysztof Polanski
Krzysztof Polanski
Tried to pass `sc.datasets.pbmc3k_processed()` through the Jupyter `%%R -i adata` syntax, encountered wall of error pasted below. Deleted `.uns['neighbors']`, the object went through just fine. anndata 0.7.5, anndata2ri 1.1.0, rpy2...
Hello, For whatever reason, I feel more comfortable running `mnn_correct()` with `cos_norm_out` set to False. As such, I tried to do it this way, and got an error about `out_batches`...
An implementation of highly deviant gene identification from the 2019 GLMPCA paper. I'm rather fond of the method, as it's a straightforward statistical measure, and comes with significance testing as...
Hello, I came across [this protocol](https://star-protocols.cell.com/protocols/1711), which describes how to get VDJ from Visium. TRUST4 seems pretty well equipped to process this data due to similar R1 structure to regular...
Hello, Recently a bunch of variably niche uses have appeared where going more granular than barcode level is desirable - pulling apart the donor composition of the read space/count matrix...
- [x] Closes #2973 - [ ] Tests included or not required because: - [ ] Release notes not necessary because: Visium HD stores its coordinates in a `.parquet` file....
**Describe the bug** Yesterday my sausage goblin was up so garbo decided to catch it in the Deep Dark Jungle. That exact turn I apparently spent enough time in the...