Kent Riemondy

update intervaltree

1

passes tests and checks but want to run through valgrind and ASAN/UBSAN before merging. closes #349

tabix, bam, and vcf reading

1

It would be nice to have some functions that pull data from indexed genomic data formats (`tabix`, `bam`, and `vcf`) into tidy tibbles. There are bioconductor approaches for data import,...

feature request: split view based on annotation

7

Commonly, collaborators using the cellbrowser request a "split" view to allow them to see cells from different samples/conditions/treatments in separate panes. They want to be able to split the dataset...

It's possible for the user to mistakenly pass a dataset twice to bed_intersect() when using the %>% operator. This happens when an intermediate function is called within the bed_intersect call....

I experienced an error similar to one reported on the [support site](https://support.bioconductor.org/p/9141351/). Incorrect annotations are returned when calling a VariantAnnotation function (`locateVariants()` with `region = IntronVariants()` ) that internally uses...