Kozo Nishida

This adds data from #65 to #249

DRMAA is a specification for executing a job regardless of the type of distributed resource manager. I will update https://github.com/ecell/ecell4/blob/master/python/lib/ecell4/extra/sge.py and https://github.com/ecell/ecell4/blob/master/python/lib/ecell4/extra/slurm.py with https://github.com/pygridtools/drmaa-python to interface with different resource management...

"desktop" link fails when install.R and runtime.txt are added

5

When `install.R` and `runtime.txt` are added to the binder directory, the "desktop" link (noVNC) does not start well. Do you have any ideas about this? This works well. https://github.com/kozo2/binder-cytoscape-desktop https://mybinder.org/v2/gh/kozo2/binder-cytoscape-desktop/master...

If you merge this pull request, please delete the table from https://github.com/cytoscape/cytoscape-automation/wiki to avoid having the same content in two different places.

I would like to add https://github.com/iVis-at-Bilkent/cytoscape.js-expand-collapse to https://github.com/cytoscape/cyjShiny/tree/master/inst/htmlwidgets/lib , but I'm unsure how to update the code for that. If you have any ideas, please let me know.

Hi @keiono thanks a lot for putting effort in this project. I really do like cyjupyter and want to be able to install from conda-forge (not only from PyPI). To...

Can I add a color scale strip to an existing plot?

3

I would like to add a color scale strip to an existing plot with _visNetwork()_ .  Here I mapped some floating values to the color. In this case rich...

The output ``` LoadError: cannot load such file -- statsample/bivariate/polychoric (pry):3:in `' /var/lib/gems/2.1.0/gems/pry-0.10.3/lib/pry/pry_instance.rb:355:in `eval' /var/lib/gems/2.1.0/gems/pry-0.10.3/lib/pry/pry_instance.rb:355:in `evaluate_ruby' /var/lib/gems/2.1.0/gems/pry-0.10.3/lib/pry/pry_instance.rb:323:in `handle_line' /var/lib/gems/2.1.0/gems/pry-0.10.3/lib/pry/pry_instance.rb:243:in `block (2 levels) in eval' /var/lib/gems/2.1.0/gems/pry-0.10.3/lib/pry/pry_instance.rb:242:in `catch' /var/lib/gems/2.1.0/gems/pry-0.10.3/lib/pry/pry_instance.rb:242:in `block in eval'...

The output ``` LoadError: cannot load such file -- statsample/bivariate/tetrachoric (pry):3:in `' /var/lib/gems/2.1.0/gems/pry-0.10.3/lib/pry/pry_instance.rb:355:in `eval' /var/lib/gems/2.1.0/gems/pry-0.10.3/lib/pry/pry_instance.rb:355:in `evaluate_ruby' /var/lib/gems/2.1.0/gems/pry-0.10.3/lib/pry/pry_instance.rb:323:in `handle_line' /var/lib/gems/2.1.0/gems/pry-0.10.3/lib/pry/pry_instance.rb:243:in `block (2 levels) in eval' /var/lib/gems/2.1.0/gems/pry-0.10.3/lib/pry/pry_instance.rb:242:in `catch' /var/lib/gems/2.1.0/gems/pry-0.10.3/lib/pry/pry_instance.rb:242:in `block in eval'...

added Python snippets

1

Hello msanders I added small Python with statement snippet. Could you please pull this snippet?