Kozo Nishida

Results 36 issues of Kozo Nishida

The following information may be required when we apply for sponsoring or grant. - Scholarly paper(s) (including preprints) citing or mentioning the software project - Monthly downloads from websites, monthly...

Display the following information after "pip install ecell" - The license document installation PATH of the E-Cell and the bundled binary libs (HDF5 and gsl)

## env - Windows10 - ecell 4.2.0 - miniconda Python 3.7.1 ## Errors ``` (base) C:\Users\a\ecell4\python\tests>python -m unittest EEE.......E.EE. ====================================================================== ERROR: test1 (core.test_context.ContextText) ---------------------------------------------------------------------- Traceback (most recent call last): File...

bug

When I tried to install bridgedb with groovysh `:grab`, I got the following error. ``` groovy:000> :grab 'org.bridgedb:org.bridgedb.bio:3.0.1' ERROR java.lang.RuntimeException: Error grabbing Grapes -- [unresolved dependency: commonj.sdo#commonj.sdo;2.1.1.v201112051852: not found] at...

This is due to forgetting to update setup.py We need to increase the version of `ecell4_base` in the ecell4 `setup.py` from 2.0.5 to 2.1.0.

I will add some tests using https://github.com/sbmlteam/sbml-test-suite to ecell4.

Although I can not give a concrete example yet, but it seems possible to use this Netflix integration testing method for E-Cell4. https://medium.com/netflix-techblog/scheduling-notebooks-348e6c14cfd6

- [ ] input csv or tsv format - [ ] output format

deployment
proposal

### input ecell4.core.NetworkModel ### output LaTeX representing the following image ![image](https://user-images.githubusercontent.com/12192/39852606-5f30c0fa-5458-11e8-804b-319224d147dd.png)

enhancement