Maike Kosanke

icon indicating a website link https://www.mhh.de/genomics

icon company Reasearch Core Unit Genomics, Hannover Medical School icon location Hannover, Germany icon location Computational biogolist with focus on transcriptomics and genomics data analysis at @MHH-RCUG.

Results 5 comments of Maike Kosanke

DEGs contrast in separate script

Yes, that is fine for me. Thanks.

DEGs contrast in separate script

Another small command to the DEGs: We were having a problem for a while to run the deg_contrast analysis. We got the error: Error in match(x, table, nomatch = 0L)...

Pseudotime analysis

For one of our project I have put together a small R markdown script which is using the output of the scrna script and performs some pseudotime analysis and cell...

Feature request: defining ground truths

Similar to the issue https://github.com/ktrns/scrnaseq/issues/46, I have put together a small R markdown script which is using the output of the scrnaseq script and performs cluster annotation with reference datasets...

Feature request: defining ground truths

@semenko, I apologize for the late reply. You can find a updated version of the annotation_with_reference script under https://github.com/MHH-RCUG/scrnaseq_modular_extensions. I would be glad to hear your feedback.