scrnaseq
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Feature request: defining ground truths
Thanks so much for this incredible work!
I'd love to see (if you're adding features), options to define ground ground truths based on known marker genes, outside just file_known_markers
— or perhaps an option to derive file_known_markers
from celldex?
I'm currently using Seurat v4 Azimuth (which unfortunately only has a few good reference databases available) and/or singleR, which has a nice workbook.