Vishal Koparde, PhD

Is it possible to get a list of readids that support (or not support) a list of known mutations? I have a bunch of T>C mutations from 4sU seq and...

I parse my STAR chimeric junction file to detect circRNAs using CIRCExplorer2. It generates a backspliced_junctions.bed file. How do I get the readids supporting the backspliced junctions so that I...

Segmentation fault

1

Everything worked as expected until I had more than 1 million lines in my query file for "**giggle search**". Then it crashed with **Segmentation Fault**. After trying to do some...

Docker needed

1

the latest docker at https://hub.docker.com/r/etal/cnvkit/ is for version 0.9.8...can you upload one for 0.9.9?

- [X] I am on the [latest](https://github.com/vercel/hyper/releases/latest) Hyper.app version - [x] I have searched the [issues](https://github.com/vercel/hyper/issues) of this repo and believe that this is not a duplicate - **MAC OS...

URL from demo.py is broken

2

Running `demo.py` gave me this error: ``` % python demo.py Creating directories: data/cc95ff89-2e68-4a08-a234-480eca21ce79.homo_sapiens.mtx Downloading file: https://data.humancellatlas.org/project-assets/project-matrices/cc95ff89-2e68-4a08-a234-480eca21ce79.homo_sapiens.mtx.zip Traceback (most recent call last): File "demo.py", line 16, in prep.getHCAdataByURL(url, extractPath) File "/home/kopardevn/anaconda3/envs/DCS/lib/python3.7/site-packages/DigitalCellSorter/ReadPrepareDataHCA.py",...