kmuench

Unusually high memory memory usage with gene_quanti

15

Hello, I noticed that gene_quanti seems to be using a strangely high amount of memory. The command I'm running is: `reademption gene_quanti -p 4 --features 'gene,cds,region,exon' --project_path READemption_project` I'm using...

[Clarification] Why are alignments fractional?

5

Hello - thank you for engineering such a helpful tool. I'm running through the tutorial and examining the file "gene_wise_quantifications_combined.tsv", which I understand contains genewise/transcript counts along with raw counts....

Difficulty running updateCutoffs() on tutorial (simulated) data

2

Hello, Thank you very much for creating and maintaining this resource! I really appreciate the work to help standardize the use of these tools in biological data types. I just...