kmuench

Hello - I am encountering this issue also in Python 3 (all tables imported are empty). Are there any updates on this issue?

Sure thing, thanks for checking it out. Here is the code I'm running: ``` import GEOparse # get sample info gse = GEOparse.get_GEO(geo="GSE97168", destdir="./") metadata = gse.phenotype_data # pandas data...

Hello! If it helps, I reran gene_quanti with --unique_only and this time it did complete in about 430 minutes using 37.5G Memory, CPU usage was about half of READemption Align.

Ah, thank you so much for explaining! My ultimate goal is to use the output of the gene quantification step (ideally) and feed it into a DESeq2-based downstream pipeline -...

Hello! I had a follow-up to this -- when I ran this command: `reademption gene_quanti --unique_only -p 4 --features gene,cds,region,exon --project_path READemption_analysis` , I still produced an output with fractional...