Fabian Klötzl
Fabian Klötzl
Hi, In Debian we recently had the problem, that a tool had a [function called `json` clashing with a value from an enum defined in `hts.h`](https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=866646). Already, most functions are...
## Platform - SeqAn version: master (3.0.0-1571-g96216a19) - Operating system: Linux AlAnfa 5.7.7-arch1-1 #1 SMP PREEMPT Wed, 01 Jul 2020 14:53:16 +0000 x86_64 GNU/Linux - Compiler: g++ (GCC) 10.1.0 ##...
fqtools is missing a man page. Or even on for each sub-command. [help2man](https://www.gnu.org/software/help2man/) should get you started.
This might be more of an inquiry that an issue. I am currently interested in how two sketches are compared. Judging from [the code](https://github.com/marbl/Mash/blob/master/src/mash/CommandDistance.cpp#L347-L365) the *hashes* are compared, not the...
Alignment-free methods are commonly criticized for lacking support of bootstrapping. Indeed, there so far have been few papers on computing support values without a MSA ([1](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4810242/), [2](https://bsapubs.onlinelibrary.wiley.com/doi/full/10.1002/ajb2.1016)). However, I think...
Murmur3 is sensitive to the endianess of the system and thus can produce different results depending on that. On debian this leads to breakage on big-endian systems [(log)](https://buildd.debian.org/status/package.php?p=mash) [(bug tracker)](https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=918566)....
If one sets `-DARCH_32` during compilation the tests fail as a different hash function is used compared to the reference. I propose to recreate 32bit tests or simply deactivate them...
Please update to the [latest version of kseq.h](https://github.com/attractivechaos/klib/blob/master/kseq.h).
Hi, Thanks for releasing 1.4.4. Currently I am trying to package the new version for Debian. Unfortunately, Debian recently switched to OpenJDK 11 as its default java version. This prevents...
Here is an assorted list of tools for which completions might be of interest to some users. - [ ] annovar - [ ] bamstats - [ ] bcftools -...