Fabian Klötzl

What is the best way to install zsh completions? Is there even a proper cross-platform way to find the fpath? Also, how do I install wrappers‽

Jellyfish comes with good documentation. Any user of biozsh with interest in jellyfish, this might be a valuable first issue to learn the basics of writing a completion function. Mark...

The [bedtools](https://bedtools.readthedocs.io/en/latest/) are properly documented, however, I don't use them. Help by an interested person would be greatly appreciated. Mark the [_bedtools file](https://github.com/kloetzl/biozsh/blob/master/completions/_bedtools) as executable, when done.

dnax_count_mismatches_wg

1

Count substitutions with gaps. How should the interface look like?

Rust is getting more and more popular in bioinformatics. Libdna already has a C and C++ API. Can libdna simply be wrapper via Rusts FFI?

C++23 provides a new method [resize_and_overwrite](https://en.cppreference.com/w/cpp/string/basic_string/resize_and_overwrite) to allow access to the uninitialized bytes of the buffer. This can be used to skip the default initialisation.

Provide a Python API to access the C functions. Things to consider: - Which functions, all functions? - Best interface? - Compatibility to BioPython

When asked to create an acronym for [Compiler Language With No Pronounceable Acronym](https://en.wikipedia.org/wiki/INTERCAL) the program gives a number of answers but not the correct one: INTERCAL. Additionally, some of these...

describe bed coordinates as zero-based half-open intervals

1

While zero-based coordinates may seem confusing at first, describing bed features as a mixture of zero- and one-based positions is even more confusing.

As NOISE1 has the lowest two bits set to zero the top to bits of n get shifted out and don't affect the result. This means that the sequence repeats...