Fabian Klötzl

Hi Andrea, Building with a local library is always a bit tricky. You can try the following. Instead of `LD_LINCLUDE_PATH` which is not a thing use `C_INCLUDE_PATH`. Then try to...

Please note that you have to replace `$PATHTOLIBDIVSUFSORT` with wherever you did build libdivsufsort. That should do the trick.

That's great to hear! Pleased I could help and we managed to produce such a nice speed up. :+1:

Thanks for your continued effort on this. Could you give me the error you get on arm? I was certain that with my change it should have been fixed.

Ah, so I think the problem here is the following. On 32bit systems `saidx64_t` is bigger than `size_t`. Hence the shift is larger than the underlying type and produces a...

No. snp-dists requires all sequences to be of identical length. If your sequences are of varying length you have to align them first.