klgoss

Running pycisTopic on large datasets?

8

Any update on this? I'm trying to run pycisTopic on a large dataset (~114,000 cells) and have maxed out the memory requirement on HPC (700GB) and it still crashes. Any...

Hello, I am excited to use this wonderful tool. I was wondering how the updated `pred.thresh` is determined in the updateDAcells function? The tutorial uses -0.8 and 0.8, but I...

Error when using addClusters() on multiome data

18

Hello, Thank you so much for creating such a great tool. I really appreciate how thorough you are in the manual and do a great job of explaining what you're...