klgoss

Did anyone find a resolution to this? I'm having the same issue with code that used to work and now getting this error since updating to V5.

It crashes at this step: `cistopic_obj.add_cell_data(cell_data)`. This is with 12 nodes and 700GB of memory. The error I'm getting is `/var/lib/slurm/slurmd/job609736/slurm_script: line 17: 86137 Killed python pycisTopic.py slurmstepd: error: Detected...

The files are pretty large-- The atac sparse matrix is around 55 GB and the cell data is 23432314 bytes. This dataset is actually 13 samples, so I guess I...

@dburkhardt I am following the pycisTopic tutorial here: https://pycistopic.readthedocs.io/en/latest/Toy_melanoma-RTD.html# which is why I tried using pd.read_csv(). I created my sparse matrix from my Seurat object in R with the following...

I'm having the same issue. Has anyone found a solution?