BIGSdb
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kjolley
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
For cgMLST, tree drawing from profile distance matrix will be much quicker.
This would have to be called with POST, with the allele values sent as the payload.
rMLST submission requires genus/species information
At the moment, a new version of an isolate record can be created and links to the older or newer versions are enabled. This cannot be done afterwards (in the...
You can't currently search for loci based on aliases or descriptions.
This would speed up queries of large databases using such counts - this would not, however, work for sets since loci can be excluded from these. The lookup table would...
Plugin to allow searching of loci by characteristics such as membership of schemes, no. of alleles defined, sequence flags etc.
This is possible in the curation interface but there is no way for a submitter to add this information to the submission other than in a comment.
Batch updates already exist in the curation interface but there is no way these can be submitted other than via E-mail to the curator.