aPEAR

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installation errors

2

Hi， The following error is reported while installing aPEAR: ``` 267: edges %>% 268: .[ , xStart := lapply(from, \ ^ ``` Can it be solved? Thanks

zhouxp9709

The text is not fully displayed in the output of the "enrichmentNetwork."

1

Hi, Thank you for creating such a useful package. I have a straightforward question to ask you. After running the function “enrichmentNetwork”, the text in the output PDF file exceeds...

ShuaiNIEgithub

Thank you for providing such a good interactive plotting method to visualize the enrichment results. However, I would like to hide/remove the text on the graph nodes, how can I...

Smilenone

Error in findPathClusters(enrich, cluster = "hier", minClusterSize = 3) : could not find function "findPathClusters"

1

I am using aPEAR in Rstudio, with the version aPEAR_1.0. It worked perfectly in a cloud computing env. However, in Rstudio, when I tried to use findPathClusters, I got the...

MANZHAOHUI

library(Spectrum) enrichmentNetwork(enrich@result, clustMethod = as.character("spectral"), drawEllipses = T, fontSize = 2.5, repelLabels = T ) Error in as.character(package) : cannot coerce type 'closure' to vector of type 'character' Thank you...

jamesbangbang1126

A problem has arisen with the installation of this package. This fixes it. Also, more information has also been added on how to install the required packages. ```R > devtools::install_github('ievaKer/pathExplore')...

doas3140

Is it possible to further analyse specific clusters from the results of enrichmentNetwork()? Some cluster names don't seem to fit the clusters. Any suggestions for further analysis? Best regards, Glenn

GlennRDx