Keiran Raine

**Issue** Unable to create a virtualenv with `python3.10 -m virtualenv .venv`. `-m venv .venv` works to create an environment, but `pre-commit` uses `-m virtualenv` internally. **Environment** Provide at least: -...

Step to previous/next visible feature in track

20

Hi, Would it be possible to add the ability to step to the previous/next variant in a VCF track? This follows on from the 'show PASS' ticket I submitted last...

display deleted sequences in Alignments2 tracks

11

Could the ability to optionally show the reference sequence of deleted regions of reads rather than `*` be added? Thanks

Consider support for pairix indexed bgzip files

6

Consider implementing support for pairix indexed bgzip files: https://github.com/4dn-dcic/pairix#pairix This essentially allows bedpe files to be 2D indexed. This is likely a solution to any of the arc/rearrangement tracks (provided...

alignments2 - change track height in track menu

6

Is this on anyone's radar? I know it's a simple item to add directly

Alignments2 - Highlight this match

2

The right click context menu give a 'highlight this match' option. This suggests that it would highlight the mate read but it highlights the current read. Ideally this would highlight...

ChunkSizeLimit not honoured when change in 'edit config'

1

We regularly set chunkSizeLimit appropriately on BAM tracks with no problems but I've recently discovered that changing the value via the track menu and 'edit config' doesn't seem have an...

### Actual behavior Links out to docs-legacy site: https://docs-legacy.requarks.io/wiki/install/database ### Expected behavior Move to corresponding page on docs.requarks.io: https://docs.requarks.io/wiki/install/installation/database ### Steps to reproduce the behavior Select the `Database guide` link...

Function to import tools from URL

5

Firstly sorry if I've failed to find the relevant bit of documentation. It appears you can modify the tool cwl path after using a local copy of a repository but...