Hongkui Zhang comments

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                                            Hongkui Zhang

sg.config configuration (The homology of the de novo assembled genome is not known)

> No. It may be very easy to know the homology by aligning your chromosomes to the genome of Fragaria vesca using tools such as minimap2 etc. You may be...

sg.config configuration (The homology of the de novo assembled genome is not known)

Thanks for your quick reply!

提问

I think this due to the environment. export PATH=/your/path/to/ALLHiC/scripts/:/your/path/to/ALLHiC/bin/:$PATH This may be helpful.

Question about preparing FASTA Input Files for Assessing Haplotype-Resolved Genomes of Autotetraploid Species Using Merqury

Thank you for your answer. I am sorry for not providing detailed information. My species is an autotetraploid, and the diploid ancestral species also has a assembly. However, I believe...

An error when running ‘test’, probably related to 'bedtools'

@FayeFang17 Hello, I meet the same issue when I run test file. I install EDTA by: 1. git clone https://github.com/oushujun/EDTA.git 2. mamba env create -f EDTA_2.2.x.yml the log file shows:...