Brandon Seah

Thanks for the suggestion; we'll keep it in mind for future updates!

`axis.ticks.margin` was deprecated in ggplot2 version 2.0.0. I tried running the heatmap script on my own data using ggplot2 version 1.0.0. It works without `no-split` option, but when `no-split` is...

Hello Bob, Thanks for your message. You're right, this is a major limitation of the tool as it is currently designed. At the moment it may be possible to hack...

Hello Bob, Yes the eukaryotic taxonomy definitely has more ranks than the prokaryotic one, and the main limitation as you have found is that they are not all to the...

hello @FranckLejzerowicz thanks for reporting this issue. My hunch is that perhaps some of the taxon strings were not parsed properly but this wasn't picked up in the DB build...

Thanks for spotting this @lielbe , I didn't notice it earlier. If @FranckLejzerowicz can confirm, this is probably caused by there not being any full-length sequences assembled by SPAdes. Will...

Yes unfortunately it is hard to predict what will happen because it very much depends on the library composition. Sometimes SPAdes works, sometimes Emirge works, sometimes neither (or both!), so...

Hello! Unfortunately we haven't implemented an easy way to do this, and the %id histogram in the output report is based on the BBmap summary output. The SAM mapping file...

Thanks for catching this. It's not to do with the parameters you are using. Vsearch doesn't calculate an E-value for nucleotide alignments and sets it by default to -1. We...

Hello, thanks for reporting this. Could you please attach the original command you used, the full log, and the output of the log file `cami_match.plotscript.out`? Is there a specific reason...