Kat Holt
Kat Holt
Hi there, do you mean you want to create a Kaptive database of loci from a new organism (ie other than Klebsiella pneumoniae or Acineobacter baumanii)? This takes a fair...
Thanks for this. Could you submit the modified code as a pull request?
Thanks very much for contributing! However installation instructions are in the wiki. We prefer to keep all instructions/documentation in the wiki rather than the readme. I realise some people prefer...
Thanks, should be possible for us to fix in a future update. But in the meantime sounds like there's a simple solution on user side, so I'll leave this issue...
The reported read depths represent the top scoring alleles only (one per locus).
Apologies for the late response, I somehow missed this earlier. The question of SHV diversity in the public databases, and in Klebsiella, and how we use this to detect and...
Hey Danielle, thanks for adding this info. Just one thing - "On a modern computer, the `mykrobe predict` command typically takes less than 1 minute to complete. With multiple threads...