kangxiongbin

Don't find the reference

1

**CODE:** hap.py 40X_deepvariant_illumina_tumor_only.vcf 40X_PEPPER_MARGIN_tumor_only.vcf -r /public/groups/vg/xkang12/data/GCA_000001405.15_GRCh38_no_alt_analysis_set.fasta -o hap_result/ **ISSUE:** WARNING No reference file found at default locations. You can set the environment variable 'HGREF' or 'HG19' to point to a...

Hi, I used metaquast to evaluate the assembly results. The reference contains 100 strains. I found that results in this folder combine_reference gave 76% of genome fractions, but the average...

ERROR: [MetagenomeSimulationPipeline] 'M' in line 122

3

Hi, I encouter below problem. How to deal with? Thank you very much! 2023-11-21 07:24:37 INFO: [MetadataReader 14212213139] Reading file: '/prj/hybrid-assembly/tmp/tmpfkd2zgz6/read_start_positionsz_npvgow' 2023-11-21 07:24:38 ERROR: [MetagenomeSimulationPipeline] 'M' in line 122 2023-11-21...