kaltin

Job is in D state for a long time

10

Hi, I am trying to plot an individual fast5 file, and therefore installed the requirements to run: `python SquigglePlot.py -i ~/data/test.fast5` `(version python = 3.7)` However, after the script said...

bamCoverage does not accept trancriptome mapped alignment files

2

Hi, I am using transcriptome mapped alignment files and I wanted to visualize them on IGV in bigwig format. However, as far as I understand, bamCoverage is not able to...

Aborted eventalign run

3

Hi, I was running an eventalign, which suddenly aborted due to an error. I would be glad if you could help me understand what is the issue. My command line...

Nanopolish goes into "uninterruptible sleep" (D) mode

1

Hi! I am trying to use `nanopolish eventalign`, however the tool goes into `D` state as if asking for `I/O` interuption, after 38 seconds:  My command is as follows:...

Hi, I am using tombo for my direct RNA library, and the command gets 'D' state and does not proceed. My command line is: ``` tombo resquiggle --rna home/fast5/ home/genomes.fa...

Loaded model cannot reproduce the predictions of the saved model

8

Hi, I am trying to save and load my model, and I believe there is a problem regarding its implementation. I train my model and test on a dataset. Then...

Running nanopolish with reproducible results

5

Hi, I run nanopolish event align three times with the same input. 2/3 of them had been run in the same conda env to ensure that all packages are the...